rs31976497 SNP Detail

Summary

• ID
  rs31976497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82768376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAAATCATA AAATTATGTA TTGGCAAATT CCAAAGAATG AACTCAAATA TGAACTATAA
  ATTTTCATTA ATAGTAATGT ATCAATAATT GTTCATCAAC TGTACCAAAC ATACCACATT
  AGTCTAACAC ATTAATAATA GGATACCCTT TCATGCCCTC CACAGGCAGC AGGCATTTAC
  AGTATACAGA CATTCATGAA GGTAAAACAC TTATACACAG GGGAGGGCTT GGTGGTGAAG
  AGCTTCAATC TCAGTGCTCG GGAGGCAGAG GAAGAGGCTG AAGGATCTAC AAAGCAGGTT
  Y
  TAAGACACCT AGGGCTAATA TATAGAGAAT CCCTATCTCA AAAACAGACA AGAAAATACT
  AATACACAAG TAAATAAATC CTTAAAAAAC AGAACAAGGG AATCAACTCT TACAAGTTCT
  AACTTTCACA AGCACGTCAT GGCATGTGCA CATTCACCTA CACCACAATA AATAAACAAT
  GCAATAAAAA ATTTAAGCTA AAGAGAAGGT GCAAAAAAAA AAAAAAAAAA AAAAAGGGAA
  AGTAGAGAAG GGATATGGAA GTGGCAGAGT GCTTGCCCAG CACACAAGAC CTCACACAAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39347578	mCV25145502	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31976497					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82768376 () rs orientation: forward

Symbol	Name	Function Class
Tcf20	transcription factor 20	within coordinates
Tssr135590	transcription start site region 135590	210 bp downstream