rs31977002 SNP Detail

Summary

• ID
  rs31977002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG CCTCAGTTTC CTTCAACGGT
  R
  GGCTGTAACT TGTGAAGGGA AACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46090059	mCV23833162	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148642723	ENSMUSSNP5509731	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss322127380	CHEV_7_29939986	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31977002					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854392 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	713 bp upstream
Cpgi18740	CpG island 18740	332 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1486 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	1006 bp downstream
Rr400219	regulatory region 400219	1145 bp upstream
Rr644490	regulatory region 644490	739 bp distal
Rr644491	regulatory region 644491	223 bp proximal
Rr644492	regulatory region 644492	735 bp proximal
Rr644493	regulatory region 644493	1206 bp proximal
Rr644494	regulatory region 644494	1229 bp proximal
Rr644495	regulatory region 644495	1354 bp proximal
Tssr65599	transcription start site region 65599	676 bp upstream
Tssr65600	transcription start site region 65600	704 bp upstream
Tssr65601	transcription start site region 65601	777 bp upstream
Tssr71610	transcription start site region 71610	630 bp downstream
Tssr71611	transcription start site region 71611	655 bp downstream
Tssr71612	transcription start site region 71612	750 bp downstream
Tssr71613	transcription start site region 71613	969 bp downstream
Tssr71614	transcription start site region 71614	996 bp downstream
Tssr71615	transcription start site region 71615	1205 bp downstream