rs31977646 SNP Detail

Summary

• ID
  rs31977646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155319398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA GGGTGTTTTT CTCATATAGC
  Y
  ATTTTTCCTT GCTGCAACAG GGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss45592759	mCV22847358	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss46777543	NES11004282	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	T	C	C
ss148112890	ENSMUSSNP3133755	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31977646					SNP	T	T	T	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777543	NES11004282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155319398 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	within coordinates
Rr1208	regulatory region 1208	within coordinates
Rr88175	regulatory region 88175	798 bp distal
Tssr40624	transcription start site region 40624	394 bp downstream
Tssr40625	transcription start site region 40625	545 bp upstream