rs31979046 SNP Detail

Summary

• ID
  rs31979046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46965928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT TAAAATAATT TATCTAAAAA
  W
  ACAGTTGTGT AGTATTAAGT ATTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45092257	mCV23237559	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss149066409	ENSMUSSNP2161592	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss319712759	CHEV_1_46983613	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31979046					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46965928 () rs orientation: forward

Symbol	Name	Function Class
Rr410623	regulatory region 410623	1571 bp distal
Tssr11557	transcription start site region 11557	996 bp upstream
Tssr11558	transcription start site region 11558	964 bp upstream