rs31979097 SNP Detail

Summary

• ID
  rs31979097
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80076090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC CTCTCCTCAG ACTCTATGTC
  W
  GCCTCTCACT AGAGAAATGG GAAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39347854	mCV23256735	ABI	CRAMUS_MOUSE	f	SNP		T						A		T
ss63569474	NES17022489	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T		A	T	T	T		A	T	T	A		A
ss148214318	ENSMUSSNP5356886	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss325030264	CHEV_15_80022319	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31979097					SNP	T	T	T	T	T	A	T	A	A	T	T	T	T	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569474	NES17022489	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80076090 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505907	regulatory region 505907	1484 bp distal
Rr505908	regulatory region 505908	within coordinates
Rr505909	regulatory region 505909	623 bp proximal
Rr505910	regulatory region 505910	1124 bp proximal
Tssr4660	transcription start site region 4660	1221 bp upstream
Tssr132185	transcription start site region 132185	11 bp downstream
Tssr132186	transcription start site region 132186	273 bp upstream
Tssr132187	transcription start site region 132187	1111 bp upstream
Tssr132188	transcription start site region 132188	1164 bp upstream
Tssr132189	transcription start site region 132189	1184 bp upstream