rs31979319 SNP Detail

Summary

• ID
  rs31979319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153425389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT CCCAAAGCTA CCCTGCCCAG
  Y
  GTACCTGACT TCACTCCTCT GCTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45091781	mCV23521078	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss145744833	ENSMUSSNP6840505	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31979319					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153425389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	within coordinates
F630010C12Rik	RIKEN cDNA F630010C12 gene	within coordinates
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr420696	regulatory region 420696	1667 bp distal
Rr420697	regulatory region 420697	within coordinates
Rr420698	regulatory region 420698	392 bp proximal
Rr420699	regulatory region 420699	1248 bp proximal
Rr420700	regulatory region 420700	1334 bp proximal
Tssr14276	transcription start site region 14276	54 bp downstream
Tssr14277	transcription start site region 14277	91 bp downstream
Tssr14278	transcription start site region 14278	175 bp downstream
Tssr14279	transcription start site region 14279	195 bp downstream
Tssr14280	transcription start site region 14280	402 bp downstream