rs31980544 SNP Detail

Summary

• ID
  rs31980544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125870461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCATGT ATGTGGGGTG
  CACATGCATG TGTGTGCATG TGCAGACGGA GGTTGATTCT CTTGTTCTCT ATTTTACAAA
  TTGAGGCATG GTTTCTCACT TGAACCTAGA GCTGACTCAT TCGGCTAGTC TTGCTAGTCA
  GCTTGCTCTG GGGATCCTGT CTGCCTCCTA AATGCTGGGA TTCTAGGCTG CTACACCTGC
  Y
  CAGCCATAGC TGAGTCCTGG GGGCCTGAAC CCTGGTCTTT AGCAGCATCT CGCTTGGTTC
  CCCTTCTCCC CTCCCGTACT TATTTATTTA TTCAGAGACT GGGTCTTTCA CTGGAACTCA
  CGGATCAGAT CAGGCTGGTC CCTGGGATCC ACCTGTTTCT GCCTTCCCAG GGCTGGAACT
  ACAGGTGTCA TGGCACTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46091085	mCV25172306	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145871765	ENSMUSSNP4072999	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31980544					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125870461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	428 bp proximal
Rr368426	regulatory region 368426	459 bp upstream
Rr381444	regulatory region 381444	239 bp downstream
Rr655453	regulatory region 655453	840 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1124 bp upstream
Tssr69003	transcription start site region 69003	1139 bp upstream
Tssr69004	transcription start site region 69004	1155 bp upstream
Tssr69005	transcription start site region 69005	1174 bp upstream
Tssr69006	transcription start site region 69006	1186 bp upstream
Tssr69007	transcription start site region 69007	1217 bp upstream
Tssr69008	transcription start site region 69008	1237 bp upstream
Tssr69009	transcription start site region 69009	1300 bp upstream
Tssr69010	transcription start site region 69010	1495 bp upstream
Tssr69011	transcription start site region 69011	1558 bp upstream