rs31980747 SNP Detail

Summary

• ID
  rs31980747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37299423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAAGCCCA GCACTGTTTC CCTGAACACT
  ACTACTGGTG ATGCCTGCTT GGTAGGCTTT GATCTGAATT TTTGAAGTTT GATGATTCAT
  ATTTTCAAGT ACATACAAAA CACAAAGAGA GAACATTAGG AAAGCTGGTG CTCCCTCACT
  Y
  GACACAATCT CTAATGGGTT TGTCGGTTAA AATTTAATCT TCATTCCTTG CTTTCATCTA
  ACATCCAGTC TATTTTCAAA GTTACCCaat taatttataa tttttaatCC TGAATAGATA
  Actggggaag tagctcagtt atataaccct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45092910	mCV24143417	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss148937676	ENSMUSSNP6361859	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss319691085	CHEV_1_37317187	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31980747					SNP	C	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37299423 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	936 bp proximal
Gm69908	predicted gene, 69908	15 bp downstream
Rr409496	regulatory region 409496	1688 bp distal