rs31981858 SNP Detail

Summary

• ID
  rs31981858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76366847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT ATATCATCCT GGATTTGCAT
  Y
  AAGTTGAGAC CGTATTGTGT GCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45593689	mCV24416342	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss146590097	ENSMUSSNP21849	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31981858					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76366847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	718 bp proximal
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr90206	regulatory region 90206	847 bp distal
Rr101140	regulatory region 101140	within coordinates
Tssr42162	transcription start site region 42162	1158 bp downstream
Tssr42163	transcription start site region 42163	1868 bp downstream
Tssr42164	transcription start site region 42164	1980 bp downstream