rs31983854 SNP Detail

Summary

• ID
  rs31983854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48530614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGATCCG GGCTGCGGAC
  GGAGCGCACG AGCCCGGGTT CCGATGGAGC ACGCACCGAG CCTGCATCGG GGGAGATGCT
  GAAGTTTCTC GCCTGACACA CACGTGCACA GGCTCAGAAG GAAGGACTTG TGAAGTGGCC
  TGAGAACAAC CCTCCAATTC AGCCTCTGCG CTCTAAGCGC ACGACCGGGC ATTTACAAAG
  R
  GCTTTGGGAT CTTGACCCCC TTTTTCAGGC TTCTTTCAAT ACACGAAGTA CTGGGGCGAG
  GGAAGGATTC CCTAGGTGCC GAAATCACCG CGATGCCAAA GCGCACCGTA CGCTGCGCTC
  CCGGTCCCAG GTACAGTCCC CAGCAGTAGC CCGCGTCCCG CCCGGCGCAA GCACTGGCTC
  CTCCTCCCCG CCAACTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46090954	mCV24996017	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31983854					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48530614 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19137	CpG island 19137			within coordinates
E2f8	E2F transcription factor 8			Intron
				mRNA-UTR
Gm2788	predicted gene 2788			within coordinates
Rr400335	regulatory region 400335			80 bp upstream
Rr400336	regulatory region 400336			783 bp upstream
Rr646935	regulatory region 646935			1486 bp distal
Rr646936	regulatory region 646936			979 bp distal
Rr646937	regulatory region 646937			within coordinates
Rr646938	regulatory region 646938			165 bp proximal
Rr646939	regulatory region 646939			519 bp proximal
Rr646940	regulatory region 646940			720 bp proximal
Tssr66768	transcription start site region 66768			466 bp upstream
Tssr66769	transcription start site region 66769			998 bp upstream
Tssr72630	transcription start site region 72630			113 bp downstream
Tssr72631	transcription start site region 72631			126 bp downstream
Tssr72632	transcription start site region 72632			166 bp downstream
Tssr72633	transcription start site region 72633			738 bp downstream
Tssr72634	transcription start site region 72634			775 bp downstream
Tssr72635	transcription start site region 72635			1485 bp downstream