rs31984773 SNP Detail

Summary

• ID
  rs31984773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120635106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGGGGTT CTACCGGTTG
  GATGGGGTTG GATGGTCTTT TCATTAGCTA TTTGTACCAC TTAAAGAAAC ATGCATGGGT
  CAGCTGTTGA ATTAAGAGGG AGGTAGTTTG CATTTGACCG TAAGTAGTTT GTGGTTAACC
  TTGCAGTCAC AGAAGAGAAG CCTTTGAATT TAGACAAACT TTGCGCTTTT TCTAAAAGCC
  Y
  GAGTTTAGTA TGTCTTGCTT TTACAGAGAG ATGTAAGGAA TGATTCCTTG TGTTATTTGG
  ACCTCACCTT TTTATGTATA ACAGCATTAA GATTTTATTT GCTATTAACT GGATTGTGTT
  GTTTTTTTTA TGGTGTTGGG ATGGAACCCA GGTCCTGGAA ACTGTTCTAC CCTGATCAAT
  ACTCAGACCT CATTTTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46090875	mCV22912493	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31984773					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120635106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	335 bp distal
Gm9905	predicted gene 9905	787 bp upstream
Mettl9	methyltransferase like 9	within coordinates
Rr166622	regulatory region 166622	within coordinates
Rr400600	regulatory region 400600	1197 bp downstream
Tssr68813	transcription start site region 68813	1462 bp downstream
Tssr68814	transcription start site region 68814	1354 bp downstream
Tssr68815	transcription start site region 68815	1303 bp downstream
Tssr68816	transcription start site region 68816	1165 bp downstream
Tssr68817	transcription start site region 68817	1118 bp downstream
Tssr68818	transcription start site region 68818	1090 bp downstream
Tssr68819	transcription start site region 68819	317 bp downstream
Tssr68820	transcription start site region 68820	223 bp downstream
Tssr68821	transcription start site region 68821	783 bp upstream
Tssr74531	transcription start site region 74531	1433 bp upstream