rs31985527 SNP Detail

Summary

• ID
  rs31985527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:90767454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAAGGAAT ACAGACATGA AATACAAAAA CAGAGTACGA
  AGTAGGATAT CAAATCTTAA AGATGCAAAG AATCCAAATT TAAGGAAAAA TGTGCTGTGT
  R
  GGAATGTTCC TCCTGACCTA TTTGCTAGAA TGAAAGCAGA GGAAATGGCT AGTGATGAGC
  TCAAAGAGAT GAGGAAAAAC CTGACCAAAG AAGCCATCAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48111457	NES12062483	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31985527					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48111457	NES12062483	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:90767454 () rs orientation: forward

Symbol	Name	Function Class
Gm62434	predicted gene, 62434	within coordinates
Rr312310	regulatory region 312310	453 bp distal
Tcea1-ps1	transcription elongation factor A (SII) 1, pseudogene 1	within coordinates
Tssr132706	transcription start site region 132706	195 bp downstream