rs31987127 SNP Detail

Summary

• ID
  rs31987127
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82221772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGATCTT ACTCACCTGA
  TGCAGTTCTT CGGGTCCTCC ACACAGTCGA TGTTACAGCG GAAGCGTTCC CAGGCCAGCC
  AGCCCATGGG TGGAGTCCGC AGTAGCCCAT TCTCCAGCAT CAGTACCTGA GCCACCAGGG
  CCAGTAAGAG CACTGAGGGG GAGGTGGATG GTGACTTGTA AATGGTTCCT ACAGCACCCC
  M
  CCCCCCAACC CCAGTCATCA CCTCAACCCC TCCAGCCCTT CAGCCCTCCC CAGGTACAGG
  CCAGTAGGGT TAGAGTTGCC TCAGCCTGTG AGTGCAGTCT GGGGGGGGGG GTACATGGGG
  CAAAGTAATG TATTCAAAAA GCTGTTGCTA CAGACTGGGA ATCAATGGAA CGGACCCCTG
  AAGTCATGTC CTTGATATAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39348873	mCV23873711	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31987127					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82221772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	1080 bp proximal
Naga	N-acetyl galactosaminidase, alpha	within coordinates
Pheta2	PH domain containing endocytic trafficking adaptor 2	1376 bp upstream
Rr506479	regulatory region 506479	1201 bp proximal
Rr506480	regulatory region 506480	1399 bp proximal
Rr506481	regulatory region 506481	1533 bp proximal
Tssr4669	transcription start site region 4669	1293 bp downstream
Tssr135542	transcription start site region 135542	551 bp upstream
Tssr135543	transcription start site region 135543	1199 bp downstream
Tssr135544	transcription start site region 135544	1230 bp downstream
Tssr135545	transcription start site region 135545	1286 bp downstream