rs31988536 SNP Detail

Summary

• ID
  rs31988536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128064476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGATGT ACACCACATT
  TGTGGCTGAG GCCCCTAGGG GTCAGACGAA GGGATGGCAT TCCCTGCCTG AGACTGGAGT
  TAACAGTGGT TGTGAGCTGC ATATGAGTGC TGAGAACCAA ACTGGAAGCC ACTGTAAGTG
  TGCTCTTAAC CAGCTCTCCC GTGCCCCCAG CTGCACACTG TCTCATTGAA GGAGAGAAAA
  R
  GTCTGGTGGC CAACAGAGAG CTTTGGGGTA GCTTATAGAT CTGCTTAGCT GCATACTGAA
  ACCCTACCTG AATTTACAGG TACAGTGGGA GATTGGAGGC TGCTTCTCCA TGAGCCTAGG
  AAGGAGAGAG TAAGTCTGAA CGAGAAACGG ATTATATCCC AAAGTGAAAA AGGAAAGAGC
  AACTGGGCGT GGTGGCGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46092237	mCV24293517	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss145891491	ENSMUSSNP1350137	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31988536					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128064476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	514 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	815 bp downstream
Rr656041	regulatory region 656041	1766 bp distal
Rr656042	regulatory region 656042	663 bp distal
Rr656043	regulatory region 656043	within coordinates
Rr656044	regulatory region 656044	405 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	1035 bp upstream
Tssr2414	transcription start site region 2414	1557 bp upstream
Tssr69425	transcription start site region 69425	778 bp downstream
Tssr75110	transcription start site region 75110	1575 bp upstream
Tssr75111	transcription start site region 75111	1426 bp upstream
Tssr75112	transcription start site region 75112	1365 bp upstream
Tssr75113	transcription start site region 75113	1352 bp upstream
Tssr75114	transcription start site region 75114	1192 bp upstream
Tssr75115	transcription start site region 75115	1130 bp upstream
Tssr75116	transcription start site region 75116	1090 bp upstream