rs31988725 SNP Detail

Summary

• ID
  rs31988725
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44150829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCCACCCT CAGCCACACC CCATCCCCTC ACTATGGTCT
  AGACAGGGGC TCTACCACTG AGTCCCTGAG CTCTCTTTTC ACTTTTTATT TTAATGCAGG
  S
  TATCATTTAA TTGCCCAAGA CGTCTCTGCC CTTTCTACCT CTGCCTCAGC CTTCCAGATA
  GCTAAAATGA CAGCTGTACC CAGACCTGTC TTGGCTGTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46091482	mCV25287551	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	C
ss149113606	ENSMUSSNP6130486	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31988725					SNP	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44150829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	955 bp distal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	284 bp upstream
Mybpc2	myosin binding protein C, fast-type	294 bp downstream
Rr646111	regulatory region 646111	168 bp proximal
Rr646112	regulatory region 646112	295 bp proximal
Rr646113	regulatory region 646113	503 bp proximal