rs31989286 SNP Detail

Summary

• ID
  rs31989286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:144416413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCAAAGT AGCCAGAGCC
  AGGCTGGGTT TCTAGACCAA GGGAACTACC CCATCCAATT TCCTCCTGAG TGAGGTACTT
  ACTGATTGGG GCGGGTGGGG CGGGGAGAGG GGTACTCCAG CAGGAGATAT TAAGTTGATA
  GGGGCAAAGC AGGTGAGCTA GCTATGCCTA GCGTGGACTT ATCACCTCTT CGAAATCTGG
  R
  ACAGTTTTGA CACTCCGCCT ACCTAAGAAA GATCTCTTGG GTCCCGATTG CGGCAGGTCC
  CTGGCTCACC CAGTACCCTC TTTCCCAGCC TTTCTTTACC GACGAGTGTA AATTCAAAGA
  AATACTTCTG CCCAACAACT ACAACGCCTA CGAATCCTAC GCGTACCCCG GTATGTTCAT
  GGCCCTCAGT AAGAACGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46091649	mCV24316517	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss145992511	ENSMUSSNP80470	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31989286					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:144416413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20003	CpG island 20003	277 bp distal
Cpgi20004	CpG island 20004	within coordinates
Fgf4	fibroblast growth factor 4	within coordinates
Rr366757	regulatory region 366757	1287 bp downstream
Rr366758	regulatory region 366758	784 bp upstream
Tssr70358	transcription start site region 70358	1281 bp downstream