rs31989549 SNP Detail

Summary

• ID
  rs31989549
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA GTTGACAGTT CGTGAAGCTA
  W
  TAATCAAGGT ACGGATGAAG AACTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45093414	mCV24645073	ABI	CRAMUS_MOUSE	f	SNP	A	A						T
ss50908914	NES13484765	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	T	T	A	A	A	T	T
ss148476131	ENSMUSSNP1375085	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31989549					SNP	A	A	A	A	A	T	T	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908914	NES13484765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841457 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1975 bp downstream
Rr407423	regulatory region 407423	904 bp distal
Rr407424	regulatory region 407424	1158 bp distal
Tssr5799	transcription start site region 5799	112 bp downstream