rs31989841 SNP Detail

Summary

• ID
  rs31989841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98153727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTACTCTTT TCCTTTTTTT TTTTTTTAAA CTTTAATGCT
  CACTCACTGA CCCCCTCCCA GTCACTCCCT CCCACAATCC TCTCCCCTGC CCCACCCCAA
  W
  GGAAGGCACT TCTCTGGGTT CCGTGGGACT AGCGGAATCT CAGCTCTTAC CTCCTGAGCC
  TTAGCTATAG ATCTCCCCTC AACATGTCAC CTTTCCCCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39349169	mCV23433336	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss148453781	ENSMUSSNP5326410	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325078970	CHEV_15_98086277	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31989841					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98153727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	917 bp proximal
Gm62000	predicted gene, 62000	450 bp upstream
H1f7	H1.7 linker histone	140 bp downstream
Rr311340	regulatory region 311340	172 bp proximal
Rr391174	regulatory region 391174	1618 bp upstream
Tssr136230	transcription start site region 136230	1450 bp downstream
Tssr136231	transcription start site region 136231	1563 bp downstream