rs31989933 SNP Detail

Summary

• ID
  rs31989933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175457972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA TGAATGCTCT CACACAGCTC
  R
  CTACACATAG TTTTATAATA CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45093717	mCV22956935	ABI	CRAMUS_MOUSE	f	SNP		A	G		G		G
ss46694120	NES10679198	PERLEGEN	MM_PANEL2	f	SNP	A		G	A		G	G	G	G		A		G
ss146323449	ENSMUSSNP1670037	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
ss320151874	CHEV_1_177560537	CHEVERUD	SCREENING_POP	f	SNP										A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs31989933					SNP	A	A	G	A	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694120	NES10679198	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175457972 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	1787 bp upstream
Rr396618	regulatory region 396618	1412 bp upstream
Tssr10313	transcription start site region 10313	1562 bp upstream
Tssr10314	transcription start site region 10314	1590 bp upstream
Tssr10315	transcription start site region 10315	1609 bp upstream
Tssr10316	transcription start site region 10316	1638 bp upstream
Tssr10317	transcription start site region 10317	1658 bp upstream
Tssr10318	transcription start site region 10318	1690 bp upstream
Tssr10319	transcription start site region 10319	1698 bp upstream
Tssr10320	transcription start site region 10320	1714 bp upstream
Tssr10321	transcription start site region 10321	1735 bp upstream
Tssr10322	transcription start site region 10322	1749 bp upstream
Tssr10323	transcription start site region 10323	1763 bp upstream