rs31990107 SNP Detail

Summary

• ID
  rs31990107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16046646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCGGGCAA CAGCTGTTTC TCAGCTCCCC TCCCCCAGCC
  CGGGTCCCTG GGCGCCCCCC ACCCCCATGA GGATTGCAGT GGGAAGGAGT GTGGCCAGTG
  R
  GAGGACTGTC ACCTCAGGAC TTTGGGGAGG GGTCGGAGGC CTTACCCTTT TATTTGAATC
  TCTTTGGCAC TGGCAGGGTT AGTCCGCAGT CCCCCAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46092260	mCV22939218	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss148383585	ENSMUSSNP417775	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss322110003	CHEV_7_16898070	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31990107					SNP	A	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16046646 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18371	CpG island 18371	1726 bp distal
Cpgi18372	CpG island 18372	within coordinates
Cpgi18373	CpG island 18373	826 bp proximal
Rr167075	regulatory region 167075	within coordinates
Tssr64601	transcription start site region 64601	894 bp upstream
Tssr70733	transcription start site region 70733	1386 bp upstream
Tssr70734	transcription start site region 70734	296 bp upstream
Tssr70735	transcription start site region 70735	251 bp upstream
Tssr70736	transcription start site region 70736	1248 bp downstream
Tssr70737	transcription start site region 70737	1313 bp downstream
Tssr70738	transcription start site region 70738	1332 bp downstream