rs31990910 SNP Detail

Summary

• ID
  rs31990910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46322864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACATAT GATTTCCGGT
  GCAGGGTAGG GGGGAGAGAG TCTGAGTCAC CTGTTTTATG GGTGTCCCAT TTAAATGTAA
  AAGAACATGG AATTTCCCCC CATCTGATTA ATATGTGCTA AGGATGGTGA CGGCTATCTC
  CAGTGACCCA TTGTCCCTTT GTTATGCTAG CCTCAGGAAG GTTTATTTCT CACCCATTCT
  Y
  GTTCAGCAGC CTGTGAGTGA CCCTCCAGGG CTGTTCTCCA TGTGATCTGT GTGGCTACTC
  GGAGATTTGG GAAATTTCTA CCTTAGAGCT CTGCCATCTG AATCCAGTGG TCACCAAACG
  GATAGAAATT TTGAGATGCA ATGCCAGGTT TTAAATGCTT CGGGACTCCC TCGCTACACC
  TCCTCACAGC ACTCTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46092624	mCV23850449	ABI	CRAMUS_MOUSE	f	SNP	T	C						T		T
ss48215773	NES11784952	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	T	C	T	C	T	T
ss149177931	ENSMUSSNP83884	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31990910					SNP	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215773	NES11784952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46322864 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	903 bp upstream
Tssr72530	transcription start site region 72530	1129 bp upstream
Tssr72531	transcription start site region 72531	1042 bp upstream
Tssr72532	transcription start site region 72532	934 bp upstream
Tssr72533	transcription start site region 72533	916 bp upstream
Tssr72534	transcription start site region 72534	899 bp upstream
Tssr72535	transcription start site region 72535	881 bp upstream