rs31991779 SNP Detail

Summary

• ID
  rs31991779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148712574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG ATTATAGGCA TGAGTCCTTC
  Y
  ACCCAGCATT ATTTACTTTT TGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45594592	mCV24948371	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss321421559	CHEV_4_148002226	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31991779					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148712574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	905 bp distal
Rr100546	regulatory region 100546	573 bp distal
Rr398860	regulatory region 398860	867 bp downstream
Tardbp	TAR DNA binding protein	1098 bp upstream
Tssr44612	transcription start site region 44612	1371 bp upstream
Tssr44613	transcription start site region 44613	1342 bp upstream
Tssr44614	transcription start site region 44614	1084 bp upstream