rs31992048 SNP Detail

Summary

• ID
  rs31992048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58544883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT TCTTGCCAAT GGATATAAAC
  R
  CACTGGCTAT AAATGTGATG CCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss45093744	mCV22736692	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		A	G
ss49403515	NES12780765	PERLEGEN	MM_PANEL2	f	SNP				A		G	A	G	A
ss149138133	ENSMUSSNP978811	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs31992048					SNP	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49403515	NES12780765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58544883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	480 bp distal
Gm15834	predicted gene 15834	within coordinates
Orc2	origin recognition complex, subunit 2	769 bp upstream
Rr396056	regulatory region 396056	475 bp downstream
Rr411447	regulatory region 411447	626 bp distal
Rr411448	regulatory region 411448	741 bp distal
Rr411449	regulatory region 411449	557 bp distal
Rr411450	regulatory region 411450	32 bp distal
Tssr6780	transcription start site region 6780	562 bp downstream
Tssr11783	transcription start site region 11783	782 bp upstream
Tssr11784	transcription start site region 11784	759 bp upstream