rs31992255 SNP Detail

Summary

• ID
  rs31992255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135304560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC CTGGGTCTTC CTTCAGCAAG
  R
  GCACCAAGTG CTCTGAACTG CCGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45093896	mCV23630678	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss145532377	ENSMUSSNP6264937	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss319989537	CHEV_1_137273399	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31992255					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135304560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	1346 bp distal
Rr12587	regulatory region 12587	1160 bp distal
Rr28596	regulatory region 28596	1159 bp distal
Rr30685	regulatory region 30685	1241 bp proximal
Shisa4	shisa family member 4	1585 bp upstream
Tssr13848	transcription start site region 13848	1889 bp upstream
Tssr13849	transcription start site region 13849	1876 bp upstream
Tssr13850	transcription start site region 13850	1724 bp upstream
Tssr13851	transcription start site region 13851	1712 bp upstream
Tssr13852	transcription start site region 13852	1594 bp upstream
Tssr13853	transcription start site region 13853	1577 bp upstream
Tssr13854	transcription start site region 13854	1558 bp upstream
Tssr13855	transcription start site region 13855	1545 bp upstream
Tssr13856	transcription start site region 13856	1537 bp upstream