rs31992261 SNP Detail

Summary

• ID
  rs31992261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170673680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA AGCCTGGCTG TTCGGCTGTA
  Y
  CCCCTGCTGG GTCCTGCTCC TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss45093902	mCV23198774	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		C		C
ss49528615	NES12814941	PERLEGEN	MM_PANEL2	f	SNP				T		T	C	T		T	T
ss146145970	ENSMUSSNP2027190	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
ss320113910	CHEV_1_172776242	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs31992261					SNP	T	T	T	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49528615	NES12814941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170673680 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	1432 bp distal
Rr423132	regulatory region 423132	1529 bp distal
Rr423133	regulatory region 423133	within coordinates
Tssr14928	transcription start site region 14928	311 bp upstream