rs31992642 SNP Detail

Summary

• ID
  rs31992642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94291361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCAAAG GTTGGGGGAA
  GGCAGGGCTA TTGGGAAATG GTTGTGACCT AGCAGAAGAA CCTCGGATTC TCACCCAGGT
  CCCTAACACA TTCTCAAAGA AGTCTCAGAG ACCTCAAATT ATGATCGCTA TCAGGTGCAA
  TCTTAACATC CCTTAATTTA TAGGAAACAT GAAAGGCACC ACTCAAATGT CCGTCTCCCA
  Y
  CTGAAATGCC AACATTGACA ACTCCTTTTT TACAAAACAA CCTCCCAGAA AGGGCATGTG
  GGTGGTGGAA TCCGAGGCCA GGGCATGAGT GTACCAGCAC AGATCATTAT CAAAGTACTG
  GGGTCAAGGG AAAGGTGCAA GTGCAGAGAC AAAGAATATA CAGGAAGTAG AGGCAAGTAA
  GAAACCTGCC TCCATCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47613632	NES11502910	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31992642					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47613632	NES11502910	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94291361 () rs orientation: forward

Symbol	Name	Function Class
Gm26843	predicted gene, 26843	1252 bp downstream
Gm45708	predicted gene 45708	1244 bp downstream
Rr667812	regulatory region 667812	1858 bp distal