rs31993009 SNP Detail

Summary

• ID
  rs31993009
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166227921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTGGAGCT CATCAGAAGT GAACCACAAG TTTAACAAAT
  AACCAGCCTA AGTCCTTATC TATGTCCCAT TAACACCGAT CACGAAGGCT AATTCTCATG
  K
  CACTGTGTAT AGCAGAGGTC CTTGGCCCCT TTGCAGATGG AAGCAAAGAG GCCATAGATG
  TTATGGGATA GATGCAAGGT TGCCAAGAAG TGACAGAAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45094110	mCV23027471	ABI	CRAMUS_MOUSE	f	SNP	G						G		T
ss60340745	NES15843704	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		T		G	G	T	G	G	T	G
ss146018896	ENSMUSSNP2555734	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31993009					SNP	G	G	G	G	G	G	G	T	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60340745	NES15843704	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166227921 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	1078 bp proximal
Rr422580	regulatory region 422580	1726 bp proximal