rs31993812 SNP Detail

Summary

• ID
  rs31993812
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185994191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGCATGGGT GTGCTTGTGC
  W
  CGCATGAGCA GTTTCATGGG CATAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45094596	mCV25202463	ABI	CRAMUS_MOUSE	f	SNP		A	A				T	A
ss46743133	NES10644154	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	T	T		A	A		A	A	A	T		A
ss146453769	ENSMUSSNP1342667	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss320182584	CHEV_1_188085873	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31993812					SNP	A	A	A	A	T	T	T	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743133	NES10644154	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185994191 () rs orientation: forward

Symbol	Name	Function Class
D1Mit361	DNA segment, Chr 1, Massachusetts Institute of Technology 361	within coordinates
D1Mit361.3	DNA segment, Chr 1, Massachusetts Institute of Technology 361.3	18 bp proximal
Rr372597	regulatory region 372597	within coordinates
Rr425468	regulatory region 425468	11 bp distal
Rr425469	regulatory region 425469	1993 bp proximal