rs31994592 SNP Detail

Summary

• ID
  rs31994592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150319878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TAGAAGATAT AATAACCAGT
  Y
  AAGAACACAA TGCAGTCTCT TTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45595315	mCV24222408	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148050613	ENSMUSSNP1184190	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321428722	CHEV_4_149609530	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31994592					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150319878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	1040 bp proximal
Eno1	enolase 1, alpha non-neuron	1300 bp upstream
Rr377416	regulatory region 377416	649 bp upstream
Rr605238	regulatory region 605238	305 bp distal
Rr605239	regulatory region 605239	1041 bp proximal
Tssr40390	transcription start site region 40390	1264 bp upstream
Tssr40391	transcription start site region 40391	1349 bp upstream
Tssr40392	transcription start site region 40392	1368 bp upstream
Tssr40393	transcription start site region 40393	1381 bp upstream
Tssr40394	transcription start site region 40394	1395 bp upstream
Tssr40395	transcription start site region 40395	1781 bp upstream
Tssr40396	transcription start site region 40396	1790 bp upstream
Tssr40397	transcription start site region 40397	1882 bp upstream