rs31995698 SNP Detail

Summary

• ID
  rs31995698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177152258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTGGTCT CAGAAACTTG TGCTTCATAC
  TTCTGCAATG ATTATGCAGG AAGCATTAAT TCCAGAGTTT ATGTGTTCCC TTAGCTGGAA
  AGTTGTGTTG Ccagacagac agacagacag acccagaccc agacccagac ccagacccCC
  Y
  CCCCCCCCCA CACACACACA AACCACTTGA TTTAGGGTCC CTTTCCAATA AAACATACCA
  AACAAACTCA CACTCTTTCT CTTTCTGGGG AATGTTAAAT ATTGTTAATA TGAGAGGTGT
  CTGTTCCAGG AACTATGAGC TACCACATGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45094337	mCV24606460	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146345198	ENSMUSSNP146051	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320158862	CHEV_1_179254823	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31995698					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177152258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1446 bp distal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	1941 bp distal
Rr423982	regulatory region 423982	1328 bp distal