rs31995921 SNP Detail

Summary

• ID
  rs31995921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76576437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TGTGTCTAGG AGGAAGTGCC
  Y
  GGATACAAAT GAGGCCTCTA CCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39349859	mCV23229439	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss63562367	NES17020694	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	T	C		C	T	C	T		C	C	T	C		C
ss148166257	ENSMUSSNP3110179	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss325022373	CHEV_15_76522667	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31995921					SNP	T	T	C	T	C	T	C	T	C	T	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562367	NES17020694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76576437 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16a	protein phosphatase 1, regulatory subunit 16A	within coordinates
Tssr131814	transcription start site region 131814	1658 bp downstream
Tssr131815	transcription start site region 131815	1627 bp downstream
Tssr131816	transcription start site region 131816	979 bp downstream