rs31995988 SNP Detail

Summary

• ID
  rs31995988
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18999459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCCACCT GGTCCATCTG GTTCCCCAGG GCCCAAACAG
  CCATTTGGCA CAAATTCCTG GCTGCACTGT CACACCCTGT GGCTGGGGAT GGAGACACAG
  M
  GGTGGCCCAG ACAGACTGCC CTGCCACCAG GGAGCAGCTG GTCCAGCCTT GGGGGGGGGG
  GGCAGTGCCG AGGAGGCCAC TGGCTGATGT AGGAAAACA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46093044	mCV25048925	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	C
ss148471819	ENSMUSSNP4081544	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322116785	CHEV_7_19850883	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31995988					SNP	C	C	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18999459 () rs orientation: forward

Symbol	Name	Function Class
Rr167144	regulatory region 167144	within coordinates
Rr167145	regulatory region 167145	541 bp proximal
Tssr64812	transcription start site region 64812	762 bp upstream
Tssr70883	transcription start site region 70883	1051 bp upstream
Tssr70884	transcription start site region 70884	706 bp upstream
Tssr70885	transcription start site region 70885	455 bp downstream
Tssr70886	transcription start site region 70886	1008 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates