rs31996356 SNP Detail

Summary

• ID
  rs31996356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:155618891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC TGGCCGCGTG TGTACTGGGC
  K
  GAGGCGTGCA CCGGGCCCCC GGGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ
ss45094714	mCV24605497	ABI	CRAMUS_MOUSE	f	SNP	T	T		G	T
ss49518352	NES12776253	PERLEGEN	MM_PANEL2	f	SNP			T			G
ss145779009	ENSMUSSNP3779497	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ
rs31996356					SNP	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49518352	NES12776253	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155618891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi888	CpG island 888	within coordinates
Lhx4	LIM homeobox protein 4	within coordinates
Rr28763	regulatory region 28763	within coordinates
Tssr9541	transcription start site region 9541	630 bp downstream
Tssr14367	transcription start site region 14367	1099 bp upstream
Tssr14368	transcription start site region 14368	1009 bp upstream