rs31996680 SNP Detail

Summary

• ID
  rs31996680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94292639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTCCTA AGTGACAGGC
  TGTGACCTGA AACTCTAAGT CAAATAAACC TTTTCTCCTC AAATTGCTTT CTTTGGCCAT
  GGTGCTTCTA ACAGCGACAG AAAGCTAAAC TAGTGTACTA CCTCACATAT CACCCAGCAG
  AAGGGTGACA GCTTTGTCTT CTCTGGGTCC CCAACTCCCC ATGCCATCTC TCACCCAAAG
  W
  AGACAGGAGA ACGTTTTACT AAATTGAATG GAGCAGATTT ACAAGAGTGA TTTAAGCTCC
  GTGCCTAAGC CCCATGCATA CACACAAGGT TGCCTGGCTG CTTGCATATA CGTTTTTATA
  AGCATTTTTA TTTGTTGCTT TTGAGGTAGC ATGGTCAAAA TAGCTGGCAG AAACAGTGTA
  TGTAAAGGGT GAAAGAATTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47613683	NES11502945	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31996680					SNP	T	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47613683	NES11502945	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94292639 () rs orientation: forward

Symbol	Name	Function Class
Gm26843	predicted gene, 26843	within coordinates
Gm45708	predicted gene 45708	within coordinates
Rr667813	regulatory region 667813	909 bp proximal