rs31998566 SNP Detail

Summary

• ID
  rs31998566
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126070518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GAAAGTCACC AGGAGAGACA
  S
  AGGTGCCATA CCACGTCCAG ATCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss46093220	mCV23679450	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss145873612	ENSMUSSNP407038	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss322450813	CHEV_7_133614860	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31998566					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126070518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19695	CpG island 19695	1380 bp proximal
Rr655500	regulatory region 655500	826 bp distal
Sh2b1	SH2B adaptor protein 1	within coordinates
Tssr69026	transcription start site region 69026	950 bp downstream
Tssr74716	transcription start site region 74716	1130 bp upstream
Tssr74717	transcription start site region 74717	98 bp downstream
Tssr74718	transcription start site region 74718	1037 bp downstream
Tssr74719	transcription start site region 74719	1068 bp downstream