rs31998627 SNP Detail

Summary

• ID
  rs31998627
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:72539402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCAAAG CCAGGGATTG
  GCAGGACACA GGAAGATGGG AAGGAAGAGC CAACCCTGTC TTGGGTTCAA AGGAAAGATG
  GAACACCTAC CTCCCAGAGG AGTGGTTGGA GATGACAGGA CTACATTAGA CCTCTCCCGG
  GACAATGTGT GTCCTGCACC AGTGAGCAGG GCCCTGGGAT CCCAGGAACC TGGACTTGAG
  W
  CTGGTGAATG GTTTCTGGCC CCTTACCCAG ACCATACCCA AGGGTACGAC TGTCTCTCCT
  GGATGATACT CACTCTGAAT CGCTGTCTTA TAAGACTTCG AGTAGCAAAA CAGTGCAGGG
  GAGCAGGAGA TAAGGAATGT GGTGGGTGAT GGTTTACAAC CCAACCACTG AGCCTGCAGA
  GCCCAAGAGA GCCAGCAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39349787	mCV23954878	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss148102813	ENSMUSSNP6577171	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31998627					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:72539402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7154	CpG island 7154	940 bp proximal
Trappc9	trafficking protein particle complex 9	within coordinates