rs31999165 SNP Detail

Summary

• ID
  rs31999165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89280685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCA CAATAGCAAT GAACTAGTAG
  M
  TGACTTGTTC ATTTATACCT AGGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46093328	mCV23843634	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss145284055	ENSMUSSNP7186587	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322312438	CHEV_7_96779987	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31999165					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89280685 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	620 bp downstream
Cpgi19393	CpG island 19393	1134 bp proximal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	807 bp upstream
Rr650822	regulatory region 650822	768 bp proximal
Rr650823	regulatory region 650823	1637 bp proximal
Tssr67672	transcription start site region 67672	928 bp upstream
Tssr67673	transcription start site region 67673	940 bp upstream
Tssr67674	transcription start site region 67674	1006 bp upstream
Tssr67675	transcription start site region 67675	1022 bp upstream
Tssr67676	transcription start site region 67676	1079 bp upstream
Tssr67677	transcription start site region 67677	1212 bp upstream
Tssr67678	transcription start site region 67678	1398 bp upstream
Tssr67679	transcription start site region 67679	1474 bp upstream
Tssr67680	transcription start site region 67680	1528 bp upstream