rs32000054 SNP Detail

Summary

• ID
  rs32000054
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129272274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTTGAC GAAGCACTTA
  ATTTCAGTTA TAGCCTTTTA GAAACCTCTG TAGGTCCCCA TCAAGCCCTT TGAAGAGGCA
  AGCCCGGAGG GGCTGAGATT AAGAGGCCGT GATTCTTTAT ATAAAACTAG TACAAAACAG
  TGTTTCGTGT TTTCAAATAT AAAAATTGGT CGTAAAATCA AGTTTCTCTT CTGACGTGAC
  M
  CTAATATTTA TGGCACACAA ATATCAGGTG ATACATTTCC TAAAATAGTA AACCGCTGAA
  TTTTCATACT GCTTAAATTC CACAAACTAA ATTAGTTTTC TACTTCTTCA CGCTGATTGT
  CAAGTAATGC GGAATGGGGG AGAAGATTCA AAGTCTCAAA GCATGCGTTT AATATTTTGA
  GGCGTTCCTC TCCCAAGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45595559	mCV22847818	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss147439202	ENSMUSSNP3125835	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32000054					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129272274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	402 bp distal
Gm12980	predicted gene 12980	1363 bp upstream
Rr377177	regulatory region 377177	1333 bp upstream
Rr600215	regulatory region 600215	376 bp distal
Rr600216	regulatory region 600216	900 bp distal
Rr600217	regulatory region 600217	109 bp distal
Tssr43497	transcription start site region 43497	643 bp upstream
Tssr43498	transcription start site region 43498	557 bp upstream
Tssr43499	transcription start site region 43499	531 bp upstream
Tssr43500	transcription start site region 43500	515 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	453 bp upstream