rs32000660 SNP Detail

Summary

• ID
  rs32000660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171073943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC CTTCAAAGTC ATGGCTTTTT
  Y
  TTCACTAGTT GTTATTGCAG GCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45094273	mCV23616752	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss119996771	PARCsnp_1.12463	PARC_SEQ	INBRED	f	SNP		T	C
ss119998519	PARCsnp_1.01528	PARC_SEQ	INBRED	f	SNP		T	C
ss146158226	ENSMUSSNP4437619	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320117544	CHEV_1_173176505	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32000660					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171073943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	510 bp proximal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	within coordinates
Rr423259	regulatory region 423259	738 bp proximal
Rr423260	regulatory region 423260	765 bp proximal
Rr423261	regulatory region 423261	1292 bp proximal
Tssr10000	transcription start site region 10000	978 bp upstream
Tssr15023	transcription start site region 15023	722 bp downstream