rs32000704 SNP Detail

Summary

• ID
  rs32000704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24850668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGCTGTA GGAGTAGCAG AGCCTCCTCA CCATGACTAA
  GTCTCTGACA GCATGAGCCA AGAGAAACTT GCCTTCTCTT GGGTTGTGTC AGGCACTTTG
  Y
  CATGGTGAGA CAAGTGGGTG GCTTACAGAG TATATATTTC CCTTTTCATA ATTACCAGGC
  TCCTCTGGAG GCATCTCTGT GGATGATTCA TTACCCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47614524	NES10281262	PERLEGEN	MM_PANEL2	f	SNP			C	T	C		T	T
ss148098479	ENSMUSSNP2661480	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321496130	CHEV_5_24151488	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32000704					SNP	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47614524	NES10281262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24850668 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	207 bp downstream
Tssr45439	transcription start site region 45439	200 bp downstream
Tssr45440	transcription start site region 45440	187 bp downstream
Tssr45441	transcription start site region 45441	170 bp downstream
Tssr45442	transcription start site region 45442	164 bp downstream