rs32000707 SNP Detail

Summary

• ID
  rs32000707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24850604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTAGCTC TGCTTCCTCG CTGTCACAAG GTGAGCTCTT
  TCCTCCACCA TGCCCTCACC TCACTACAGC TGTAGGAGTA GCAGAGCCTC CTCACCATGA
  Y
  TAAGTCTCTG ACAGCATGAG CCAAGAGAAA CTTGCCTTCT CTTGGGTTGT GTCAGGCACT
  TTGCCATGGT GAGACAAGTG GGTGGCTTAC AGAGTATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45781792	mCV23207939	ABI	CRAMUS_MOUSE	f	SNP	C				C	T
ss47614527	NES10281261	PERLEGEN	MM_PANEL2	f	SNP				C		T	C		T	T
ss148098470	ENSMUSSNP3427104	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
ss321496128	CHEV_5_24151424	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32000707					SNP	C	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47614527	NES10281261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24850604 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	143 bp downstream
Tssr45439	transcription start site region 45439	136 bp downstream
Tssr45440	transcription start site region 45440	123 bp downstream
Tssr45441	transcription start site region 45441	106 bp downstream
Tssr45442	transcription start site region 45442	100 bp downstream