rs32000712 SNP Detail

Summary

• ID
  rs32000712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24850324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCATGTCT CTTGTATAAA TGCTTGGGTG AGGATCATAT
  GATAGGTCAT GTTATTGTTT GACCCTAAAA TGTTCTCAGA AGTCTCATAG AGTAAGGGCT
  Y
  CATGCCAGTT GATGGGCTTT GGGGACATAA TTGGATCATA ATGGCTCTGA CCTTATCAGG
  GGACTAAGCC ATTTATGACA TCATAGTTGA GTGAACTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45774737	mCV23207944	ABI	CRAMUS_MOUSE	f	SNP	C	C			C	T
ss47614533	NES10281259	PERLEGEN	MM_PANEL2	f	SNP				C		T	C		T	T
ss148098461	ENSMUSSNP60801	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
ss321496126	CHEV_5_24151144	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32000712					SNP	C	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47614533	NES10281259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24850324 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	121 bp upstream
Tssr45439	transcription start site region 45439	139 bp upstream
Tssr45440	transcription start site region 45440	156 bp upstream
Tssr45441	transcription start site region 45441	168 bp upstream
Tssr45442	transcription start site region 45442	175 bp upstream