rs32001677 SNP Detail

Summary

• ID
  rs32001677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137722149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA AGACTGGTGT TAACGCTGTA
  Y
  ATCTTTTTTA AAGGGCTTTA GTAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45595581	mCV22546114	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147628365	ENSMUSSNP3851847	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321369522	CHEV_4_137550753	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32001677					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137722149 () rs orientation: forward

Symbol	Name	Function Class
BE691133	expressed sequence BE691133	1478 bp upstream
Cpgi15142	CpG island 15142	352 bp distal
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	111 bp upstream
Rr100351	regulatory region 100351	within coordinates
Rr398623	regulatory region 398623	1240 bp downstream
Tssr39803	transcription start site region 39803	1802 bp downstream
Tssr39804	transcription start site region 39804	1763 bp downstream
Tssr39805	transcription start site region 39805	1364 bp downstream
Tssr39806	transcription start site region 39806	1334 bp downstream
Tssr39807	transcription start site region 39807	1105 bp downstream
Tssr39808	transcription start site region 39808	905 bp downstream
Tssr39809	transcription start site region 39809	732 bp downstream
Tssr39810	transcription start site region 39810	21 bp downstream
Tssr39811	transcription start site region 39811	990 bp upstream
Tssr44154	transcription start site region 44154	1534 bp upstream
Tssr44155	transcription start site region 44155	79 bp upstream