rs32003900 SNP Detail

Summary

• ID
  rs32003900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35702506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGATTTA AGTACCATCT
  GGTTGTGCTC ATGACTTTAA AGCTGTTATC TCCACATAAA ATTTCAGAGT CCTATATTTT
  TTTCCACCAA ACTATCCATT TTTAAGCCAC AAATGTTTTC CCATCTCTTC CAGATTTTAT
  CTAAAAGTAT ATTTTAACAA TATTTTAAAA GTTCTTAAAC AATAACAATT TATCTTGATG
  R
  ATGGCATGCT GTGGTTTTTT TTTTCATTTT ATTTTAATTA GCCATTGAGG AACCAAATTC
  CCTTTTGTCT TTAGTATTTG GAATATTGTT TAATTATTGT TATCATGCCA GATATCTTAA
  AGGTTATTTT ACCAATACAG TTTCATTTAA CATAACCCAT ATGGAATCAA TAGTCTAGTT
  TCCTAAAGTG AATGCTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss39351059	mCV23384084	ABI	CRAMUS_MOUSE	f	SNP	A	G		G	G
ss51633316	NES14588591	PERLEGEN	MM_PANEL2	f	SNP			G			A	A	A	G
ss147580843	ENSMUSSNP2764557	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs32003900					SNP	A	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633316	NES14588591	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35702506 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	within coordinates
Rr309492	regulatory region 309492	942 bp distal
Vps13b	vacuolar protein sorting 13B	within coordinates