rs32005100 SNP Detail

Summary

• ID
  rs32005100
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19584074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACCT CATTATTTCC
  TCAAATCTCC CTTTATCCTG GATTTGAGTG AAGAGATGGC TTGATTTTCC TGCTCTGGTC
  CCTTGGCTCG AACCATGGCA CTAAATCTTG GAAACAAGTA TTTTACTGCT AACAAGACCT
  GGTTAAAGAG TAAAATGCCA AGCAAATGGC TGGGTACATG CGTGTCCCCT GTCATCTATC
  M
  TGTAGTTTCT TGGATGTTCA TGTGTTCACA TGGGAAGTCC TAGTGAGCTG GTTTCGTTCA
  TCTCAGAAAA CAAGGGTTCA CTGATATTAT ATCTTCAAGG TGCCATGAGA GCTCCGAACT
  CACCATGAAT GTGTCTGCCA CAGCCCCTGT GCTTCATCCT TTATCATATT CCTAGTTCTC
  ACAGAGAACA AGCTGTGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45095334	mCV23909486	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					C	C
ss50921129	NES13476834	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C		C	C	C	C	C	C	A
ss148702303	ENSMUSSNP4181541	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32005100					SNP	A	A	C	A	C	A	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50921129	NES13476834	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19584074 () rs orientation: forward

Symbol	Name	Function Class
Gm55451	predicted gene, 55451	5 bp downstream