rs32009679 SNP Detail

Summary

• ID
  rs32009679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115873264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGAAAGA ATGAAAGAGA CAAACAAACA AAGAGAAAGA
  GCAAATTCGT CAGTTCTTTA AGAGACTGAA GGGCAATTAT TTTAGACAAA ATCGGGGAGG
  Y
  GCAATGCAGG AAGACCCAGC CTTCTCCCAG CCGCCCAGCC AAATGGATTC CTTATGGCTA
  GAAGTCATCC TTCCCGTAGG CAGGAACTGT GGGCAGACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45596245	mCV25138421	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss147277409	ENSMUSSNP2454722	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C		T
ss321276770	CHEV_4_115688672	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32009679					SNP	T	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115873264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	1121 bp proximal
Faah	fatty acid amide hydrolase	within coordinates
Rr91642	regulatory region 91642	1864 bp distal
Rr99792	regulatory region 99792	within coordinates
Tssr38488	transcription start site region 38488	255 bp downstream
Tssr38489	transcription start site region 38489	1198 bp upstream
Tssr42842	transcription start site region 42842	1589 bp downstream
Tssr42843	transcription start site region 42843	1787 bp downstream
Tssr42844	transcription start site region 42844	1956 bp downstream
Tssr42845	transcription start site region 42845	1975 bp downstream