rs32010287 SNP Detail

Summary

• ID
  rs32010287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTTAAGT GTTTCTGAAA ATTTTAACCA AATGTTGTTG
  GTGGTCTTTT TGATGGATTC AACATGACAG GTTTCTGAAC TCTTTCTATG TAAATGGTAT
  Y
  TTTTTTTCAT TTGAATATGT TTGTCATACA AGATTTCAAA CTTTTCTCTA GACTTTATTT
  TTAGTCTTTC CACAATATTT TTGTCCTTCT TGAAATACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47115327	NES11602385	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C		T	T	T	C		T
ss145614826	ENSMUSSNP513479	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss322371910	CHEV_7_113649298	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32010287					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115327	NES11602385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104991 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin4	GTPase, very large interferon inducible, family member 4	within coordinates
Tssr74119	transcription start site region 74119	1813 bp upstream
Tssr74120	transcription start site region 74120	1796 bp upstream
Tssr74121	transcription start site region 74121	1733 bp upstream
Tssr74122	transcription start site region 74122	1716 bp upstream
Tssr74123	transcription start site region 74123	1683 bp upstream
Tssr74124	transcription start site region 74124	1638 bp upstream
Tssr74125	transcription start site region 74125	1627 bp upstream
Tssr74126	transcription start site region 74126	1591 bp upstream
Tssr74127	transcription start site region 74127	1440 bp upstream
Tssr74128	transcription start site region 74128	1360 bp upstream
Tssr74129	transcription start site region 74129	829 bp upstream
Tssr74130	transcription start site region 74130	780 bp upstream
Tssr74131	transcription start site region 74131	569 bp upstream
Tssr74132	transcription start site region 74132	393 bp upstream
Tssr74133	transcription start site region 74133	256 bp downstream
Tssr74134	transcription start site region 74134	483 bp downstream
Tssr74135	transcription start site region 74135	566 bp downstream
Tssr74136	transcription start site region 74136	634 bp downstream
Tssr74137	transcription start site region 74137	700 bp downstream
Tssr74138	transcription start site region 74138	730 bp downstream
Tssr74139	transcription start site region 74139	764 bp downstream
Tssr74140	transcription start site region 74140	819 bp downstream
Tssr74141	transcription start site region 74141	1219 bp downstream
Tssr74142	transcription start site region 74142	1362 bp downstream