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rs32010427 SNP Detail
Summary
  • ID
    rs32010427
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:160762034 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTGATTTGG ATGACAATTT
    GAGGGTCTAT TGGCTGTTCT ATTTCTATGT TCAAGCTCCC TCTAGTGGCC CAAAGTAACC
    CCTACCCCTT AAATTATTAA ATTCCTTTCT CCTACTTGGT ACCGCACACA ACACGCACAC
    ACAAGCTTCT TGAAAAGCAA AGGCTTGCAA GCAGTCCATT AAGTTTTACA GATTAGGACT
    R
    GAGAGTTCTT GCTGCTGAAC TGATTTCCCA GCTCCCACAC CAGGCAGCTC TTTTTCACAG
    TCACCAGTAA TTCCAGCTAC AAAGGGCCCA GTGCCCTCAT CTGGCATGCA TACTCACATG
    CAGTCACATA CACGAAAGGA AAAACAAAAT TTAAGTCTTT AAAAAAATTA ACTTATTCAT
    TTCAGTGTGT AATGCTTGTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss45096490 mCV24552622 ABI CRAMUS_MOUSE f SNP G A G G
ss60334362 NES15825967 PERLEGEN MM_PANEL2 f SNP G A G G G G G G G G G G G G
ss145902330 ENSMUSSNP4471671 ENSEMBL ENSEMBL_Sanger f SNP G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs32010427 SNP G G A G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60334362 NES15825967 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:160762034 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rc3h1 RING CCCH (C3H) domains 1 Intron
Rr421728 regulatory region 421728 438 bp distal
Rr421729 regulatory region 421729 14 bp distal
Rr421730 regulatory region 421730 128 bp distal
Rr421731 regulatory region 421731 88 bp proximal
Rr421732 regulatory region 421732 1264 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory