rs32010538 SNP Detail

Summary

• ID
  rs32010538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24850679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTAGCAGA GCCTCCTCAC CATGACTAAG TCTCTGACAG
  CATGAGCCAA GAGAAACTTG CCTTCTCTTG GGTTGTGTCA GGCACTTTGC CATGGTGAGA
  Y
  AAGTGGGTGG CTTACAGAGT ATATATTTCC CTTTTCATAA TTACCAGGCT CCTCTGGAGG
  CATCTCTGTG GATGATTCAT TACCCTGGGA TGGACCCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss47614521	NES10281263	PERLEGEN	MM_PANEL2	f	SNP			C	T	C	T	T
ss148098486	ENSMUSSNP331827	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs32010538					SNP	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47614521	NES10281263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24850679 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	218 bp downstream
Tssr45439	transcription start site region 45439	211 bp downstream
Tssr45440	transcription start site region 45440	198 bp downstream
Tssr45441	transcription start site region 45441	181 bp downstream
Tssr45442	transcription start site region 45442	175 bp downstream