rs32011176 SNP Detail

Summary

• ID
  rs32011176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAGTTT TCATTGACAA
  GAGCTTTCCA CAAATCTTGT ACTCTGAATT TAAAATCTGA GATTTTTAAG ATCCTTCCCC
  TAGATTCCTT CTGGGCGTTT GAAAGAATTA CATTCCGTAG TTCCTGGACA TTGTAGCTAT
  AGTGAGGATT GGGAGGGGCC ATTGGGGGAT TGCCATCCCA GAGGTGAGCA AAGTAGTAGA
  Y
  ATGGGAAGTG GCATCAAACT TAATTACATC ACTAAAGTGA GTTATGTTTG AGCAGTCTTC
  CAACTCTGCA GCCAATGCTG TCATTTCATC CAGTTTCTGT TCAAGTCTCC TTCCTTCTTC
  CATAGTTTGG TCTTTTGCTG TAATTTCTCC CACATTTTGA TGGACAAAGA GGCAACTGGG
  AGAGATTTTT ACTTGTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47115336	NES11602388	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32011176					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47115336	NES11602388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105859 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74129	transcription start site region 74129	1697 bp upstream
Tssr74130	transcription start site region 74130	1648 bp upstream
Tssr74131	transcription start site region 74131	1437 bp upstream
Tssr74132	transcription start site region 74132	1261 bp upstream
Tssr74133	transcription start site region 74133	604 bp upstream
Tssr74134	transcription start site region 74134	349 bp upstream
Tssr74135	transcription start site region 74135	269 bp upstream
Tssr74136	transcription start site region 74136	223 bp upstream
Tssr74137	transcription start site region 74137	157 bp upstream
Tssr74138	transcription start site region 74138	119 bp upstream
Tssr74139	transcription start site region 74139	77 bp upstream
Tssr74140	transcription start site region 74140	24 bp upstream
Tssr74141	transcription start site region 74141	351 bp downstream
Tssr74142	transcription start site region 74142	494 bp downstream